| src/python/ensembl/io/genomio/__init__.py |
(no class) |
1 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/annotation/__init__.py |
(no class) |
1 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/annotation/update_description.py |
(no class) |
107 |
13 |
0 |
46 |
0 |
92% |
| src/python/ensembl/io/genomio/assembly/__init__.py |
(no class) |
2 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/assembly/download.py |
FileDownloadError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/assembly/download.py |
FTPConnectionError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/assembly/download.py |
UnsupportedFormatError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/assembly/download.py |
(no class) |
161 |
14 |
0 |
68 |
6 |
91% |
| src/python/ensembl/io/genomio/assembly/status.py |
UnsupportedFormatError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/assembly/status.py |
ReportStructure |
3 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/assembly/status.py |
(no class) |
177 |
24 |
0 |
52 |
0 |
89% |
| src/python/ensembl/io/genomio/data/__init__.py |
(no class) |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/data/external_db_map/__init__.py |
(no class) |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/data/gff3/__init__.py |
(no class) |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/data/schemas/__init__.py |
(no class) |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/database/__init__.py |
(no class) |
4 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/database/core_server.py |
CoreServer |
25 |
0 |
0 |
12 |
0 |
100% |
| src/python/ensembl/io/genomio/database/core_server.py |
(no class) |
11 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/database/dbconnection_lite.py |
DBConnectionLite |
24 |
1 |
0 |
8 |
1 |
94% |
| src/python/ensembl/io/genomio/database/dbconnection_lite.py |
(no class) |
15 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/database/factory.py |
(no class) |
63 |
0 |
0 |
12 |
0 |
100% |
| src/python/ensembl/io/genomio/database/meta_getter.py |
(no class) |
56 |
41 |
0 |
16 |
0 |
21% |
| src/python/ensembl/io/genomio/events/__init__.py |
(no class) |
3 |
3 |
0 |
0 |
0 |
0% |
| src/python/ensembl/io/genomio/events/dump.py |
Pair |
7 |
7 |
0 |
2 |
0 |
0% |
| src/python/ensembl/io/genomio/events/dump.py |
UnsupportedEvent |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/events/dump.py |
Event |
89 |
89 |
0 |
50 |
0 |
0% |
| src/python/ensembl/io/genomio/events/dump.py |
DumpStableIDs |
94 |
94 |
0 |
58 |
0 |
0% |
| src/python/ensembl/io/genomio/events/dump.py |
(no class) |
61 |
61 |
2 |
0 |
0 |
0% |
| src/python/ensembl/io/genomio/events/format.py |
IdsMapper |
12 |
12 |
0 |
6 |
0 |
0% |
| src/python/ensembl/io/genomio/events/format.py |
(no class) |
41 |
41 |
2 |
4 |
0 |
0% |
| src/python/ensembl/io/genomio/events/load.py |
IdEvent |
4 |
4 |
0 |
0 |
0 |
0% |
| src/python/ensembl/io/genomio/events/load.py |
MapSession |
4 |
4 |
0 |
0 |
0 |
0% |
| src/python/ensembl/io/genomio/events/load.py |
EventCollection |
85 |
85 |
0 |
50 |
0 |
0% |
| src/python/ensembl/io/genomio/events/load.py |
(no class) |
48 |
48 |
2 |
0 |
0 |
0% |
| src/python/ensembl/io/genomio/external_db/__init__.py |
(no class) |
1 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/external_db/db_map.py |
MapFormatError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/external_db/db_map.py |
(no class) |
20 |
0 |
0 |
6 |
0 |
100% |
| src/python/ensembl/io/genomio/fasta/__init__.py |
(no class) |
2 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/fasta/chunk.py |
(no class) |
116 |
18 |
2 |
30 |
3 |
86% |
| src/python/ensembl/io/genomio/fasta/process.py |
FastaParserError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/fasta/process.py |
(no class) |
53 |
11 |
0 |
18 |
1 |
83% |
| src/python/ensembl/io/genomio/genbank/__init__.py |
(no class) |
2 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/genbank/download.py |
DownloadError |
1 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/genbank/download.py |
(no class) |
31 |
8 |
2 |
2 |
0 |
76% |
| src/python/ensembl/io/genomio/genbank/extract_data.py |
GBParseError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/genbank/extract_data.py |
UnsupportedData |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/genbank/extract_data.py |
GenomeFiles |
7 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/genbank/extract_data.py |
FormattedFilesGenerator |
199 |
10 |
0 |
84 |
15 |
91% |
| src/python/ensembl/io/genomio/genbank/extract_data.py |
(no class) |
52 |
11 |
0 |
0 |
0 |
79% |
| src/python/ensembl/io/genomio/genome_metadata/__init__.py |
(no class) |
3 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/genome_metadata/dump.py |
(no class) |
132 |
17 |
0 |
50 |
2 |
86% |
| src/python/ensembl/io/genomio/genome_metadata/extend.py |
(no class) |
84 |
10 |
0 |
28 |
0 |
91% |
| src/python/ensembl/io/genomio/genome_metadata/prepare.py |
MissingNodeError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/genome_metadata/prepare.py |
MetadataError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/genome_metadata/prepare.py |
(no class) |
75 |
11 |
0 |
24 |
2 |
87% |
| src/python/ensembl/io/genomio/genome_stats/__init__.py |
(no class) |
2 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/genome_stats/compare.py |
(no class) |
78 |
9 |
0 |
24 |
0 |
91% |
| src/python/ensembl/io/genomio/genome_stats/dump.py |
StatsGenerator |
33 |
0 |
0 |
6 |
0 |
100% |
| src/python/ensembl/io/genomio/genome_stats/dump.py |
(no class) |
38 |
8 |
0 |
0 |
0 |
79% |
| src/python/ensembl/io/genomio/gff3/__init__.py |
(no class) |
6 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/exceptions.py |
GFFParserError |
2 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/exceptions.py |
GeneSegmentError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/exceptions.py |
IgnoredFeatureError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/exceptions.py |
UnsupportedFeatureError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/exceptions.py |
(no class) |
6 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/extract_annotation.py |
DuplicateIdError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/extract_annotation.py |
MissingParentError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/extract_annotation.py |
AnnotationError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/extract_annotation.py |
FunctionalAnnotations |
118 |
5 |
0 |
62 |
3 |
96% |
| src/python/ensembl/io/genomio/gff3/extract_annotation.py |
(no class) |
31 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/features.py |
GFFSeqFeature |
8 |
1 |
0 |
4 |
2 |
75% |
| src/python/ensembl/io/genomio/gff3/features.py |
(no class) |
7 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/gene_merger.py |
GFFGeneMerger |
56 |
0 |
0 |
24 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/gene_merger.py |
(no class) |
13 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/id_allocator.py |
InvalidStableID |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/id_allocator.py |
StableIDAllocator |
77 |
4 |
0 |
44 |
3 |
93% |
| src/python/ensembl/io/genomio/gff3/id_allocator.py |
(no class) |
25 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/overlaps.py |
(no class) |
94 |
74 |
2 |
22 |
0 |
17% |
| src/python/ensembl/io/genomio/gff3/process.py |
(no class) |
35 |
27 |
2 |
4 |
0 |
21% |
| src/python/ensembl/io/genomio/gff3/restructure.py |
(no class) |
135 |
1 |
0 |
66 |
1 |
99% |
| src/python/ensembl/io/genomio/gff3/simplifier.py |
Records |
12 |
0 |
0 |
6 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/simplifier.py |
GFFSimplifier |
258 |
0 |
1 |
116 |
0 |
100% |
| src/python/ensembl/io/genomio/gff3/simplifier.py |
(no class) |
37 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/manifest/__init__.py |
(no class) |
4 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/manifest/check_integrity.py |
IntegrityTool |
143 |
136 |
0 |
82 |
0 |
3% |
| src/python/ensembl/io/genomio/manifest/check_integrity.py |
(no class) |
30 |
10 |
2 |
0 |
0 |
67% |
| src/python/ensembl/io/genomio/manifest/compute_stats.py |
BiotypeCounter |
10 |
10 |
0 |
4 |
0 |
0% |
| src/python/ensembl/io/genomio/manifest/compute_stats.py |
StatsError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/manifest/compute_stats.py |
manifest_stats |
158 |
158 |
0 |
92 |
0 |
0% |
| src/python/ensembl/io/genomio/manifest/compute_stats.py |
(no class) |
47 |
14 |
2 |
2 |
0 |
67% |
| src/python/ensembl/io/genomio/manifest/generate.py |
(no class) |
13 |
8 |
2 |
0 |
0 |
38% |
| src/python/ensembl/io/genomio/manifest/manifest_stats.py |
InvalidIntegrityError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/manifest/manifest_stats.py |
ManifestStats |
165 |
13 |
0 |
84 |
1 |
90% |
| src/python/ensembl/io/genomio/manifest/manifest_stats.py |
(no class) |
33 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/manifest/manifest.py |
ManifestError |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/manifest/manifest.py |
Manifest |
67 |
3 |
0 |
30 |
1 |
96% |
| src/python/ensembl/io/genomio/manifest/manifest.py |
(no class) |
22 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/schemas/__init__.py |
(no class) |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/schemas/json/__init__.py |
(no class) |
2 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/schemas/json/factory.py |
(no class) |
39 |
9 |
0 |
16 |
0 |
84% |
| src/python/ensembl/io/genomio/schemas/json/validate.py |
(no class) |
29 |
6 |
0 |
6 |
0 |
83% |
| src/python/ensembl/io/genomio/seq_region/__init__.py |
(no class) |
2 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/seq_region/collection.py |
SeqCollection |
93 |
0 |
0 |
52 |
0 |
100% |
| src/python/ensembl/io/genomio/seq_region/collection.py |
(no class) |
27 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/seq_region/dump.py |
(no class) |
124 |
13 |
0 |
54 |
0 |
93% |
| src/python/ensembl/io/genomio/seq_region/exceptions.py |
UnknownMetadata |
0 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/seq_region/exceptions.py |
(no class) |
2 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/seq_region/gbff.py |
GBFFRecord |
27 |
0 |
0 |
14 |
0 |
100% |
| src/python/ensembl/io/genomio/seq_region/gbff.py |
(no class) |
14 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/seq_region/mappings.py |
(no class) |
6 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/seq_region/prepare.py |
(no class) |
33 |
12 |
0 |
4 |
0 |
68% |
| src/python/ensembl/io/genomio/seq_region/report.py |
ReportRecord |
18 |
0 |
0 |
8 |
0 |
100% |
| src/python/ensembl/io/genomio/seq_region/report.py |
(no class) |
11 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/utils/__init__.py |
(no class) |
1 |
0 |
0 |
0 |
0 |
100% |
| src/python/ensembl/io/genomio/utils/json_utils.py |
(no class) |
13 |
0 |
0 |
0 |
0 |
100% |