Coverage for src/python/ensembl/io/genomio/manifest/generate.py: 38%

1# See the NOTICE file distributed with this work for additional information 

2# regarding copyright ownership. 

3# 

4# Licensed under the Apache License, Version 2.0 (the "License"); 

5# you may not use this file except in compliance with the License. 

6# You may obtain a copy of the License at 

7# 

8# http://www.apache.org/licenses/LICENSE-2.0 

9# 

10# Unless required by applicable law or agreed to in writing, software 

11# distributed under the License is distributed on an "AS IS" BASIS, 

12# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 

13# See the License for the specific language governing permissions and 

14# limitations under the License. 

15"""Creates a manifest file in a folder depending on the file names ends.""" 

16 

17import ensembl.io.genomio 

18from ensembl.io.genomio.manifest.manifest import Manifest 

19from ensembl.utils.argparse import ArgumentParser 

20from ensembl.utils.logging import init_logging_with_args 

21 

22 

23def main() -> None: 

24 """Main entrypoint.""" 

25 parser = ArgumentParser( 

26 description="Compare the genomic data between the files present in a manifest file." 

27 ) 

28 parser.add_argument_dst_path( 

29 "--manifest_dir", required=True, help="Folder where to create a manifest file" 

30 ) 

31 parser.add_argument("--version", action="version", version=ensembl.io.genomio.__version__) 

32 parser.add_log_arguments() 

33 args = parser.parse_args() 

34 init_logging_with_args(args) 

35 

36 manifest = Manifest(args.manifest_dir) 

37 manifest.create() 

38 

39 

40if __name__ == "__main__": 

41 main()